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mac上现在主要一跑模型,马上报错
Epochs: 0%| | 0/125 [00:00<?, ?it/s]
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 122, in spawn_main
exitcode = _main(fd, parent_sentinel)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 131, in _main
prepare(preparation_data)
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 246, in prepare
_fixup_main_from_path(data['init_main_from_path'])
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 297, in _fixup_main_from_path
main_content = runpy.run_path(main_path,
^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen runpy>", line 291, in run_path
File "<frozen runpy>", line 98, in _run_module_code
File "<frozen runpy>", line 88, in _run_code
File "/Users/yxk/Desktop/scaleX/SCALEX-main/pbmc_scaleX.py", line 18, in <module>
adata=SCALEX('/Users/yxk/Desktop/test_dataset/pbmc/pbmc.h5ad', batch_name='batch',gpu=0,outdir='./pbmc_output_AAA/',num_workers=1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/Desktop/scaleX/SCALEX-main/scalex/function.py", line 171, in SCALEX
model.fit(
File "/Users/yxk/Desktop/scaleX/SCALEX-main/scalex/net/vae.py", line 160, in fit
tk0 = tenumerate(dataloader, total=len(dataloader), leave=False, desc='Iterations', disable=(not verbose))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/site-packages/tqdm/contrib/__init__.py", line 66, in tenumerate
return enumerate(tqdm_class(iterable, total=total, **tqdm_kwargs), start)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/site-packages/tqdm/asyncio.py", line 33, in __init__
self.iterable_iterator = iter(iterable)
^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/site-packages/torch/utils/data/dataloader.py", line 438, in __iter__
return self._get_iterator()
^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/site-packages/torch/utils/data/dataloader.py", line 386, in _get_iterator
return _MultiProcessingDataLoaderIter(self)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/site-packages/torch/utils/data/dataloader.py", line 1039, in __init__
w.start()
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/process.py", line 121, in start
self._popen = self._Popen(self)
^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/context.py", line 224, in _Popen
return _default_context.get_context().Process._Popen(process_obj)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/context.py", line 288, in _Popen
return Popen(process_obj)
^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/popen_spawn_posix.py", line 32, in __init__
super().__init__(process_obj)
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/popen_fork.py", line 19, in __init__
self._launch(process_obj)
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/popen_spawn_posix.py", line 42, in _launch
prep_data = spawn.get_preparation_data(process_obj._name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 164, in get_preparation_data
_check_not_importing_main()
File "/Users/yxk/anaconda3/lib/python3.11/multiprocessing/spawn.py", line 140, in _check_not_importing_main
raise RuntimeError('''
RuntimeError:
An attempt has been made to start a new process before the
current process has finished its bootstrapping phase.
This probably means that you are not using fork to start your
child processes and you have forgotten to use the proper idiom
in the main module:
if __name__ == '__main__':
freeze_support()
...
The "freeze_support()" line can be omitted if the program
is not going to be frozen to produce an executable.
To fix this issue, refer to the "Safe importing of main module"
section in https://docs.python.org/3/library/multiprocessing.html
Epochs: 0%| | 0/125 [00:11<?, ?it/s]
Traceback (most recent call last):
问题解决:
将dataloader的num_workers设置为0,记住这里是设置为0,不是1,设置为1还是会报错的
num_workers=0